Package: ProbeDeveloper 1.1.1

ProbeDeveloper: Develop Hybridization Probes

Hybridization probes for target sequences can be made based on melting temperature value calculated by R package 'TmCalculator' <https://CRAN.R-project.org/package=TmCalculator> and methods extended from Beliveau, B. J.,(2018) <doi:10.1073/pnas.1714530115>, and those hybridization probes can be used to capture specific target regions in fluorescence in situ hybridization and next generation sequence experiments.

Authors:Junhui Li [cre, aut]

ProbeDeveloper_1.1.1.tar.gz
ProbeDeveloper_1.1.1.zip(r-4.7-any)ProbeDeveloper_1.1.1.zip(r-4.6-any)ProbeDeveloper_1.1.1.zip(r-4.5-any)
ProbeDeveloper_1.1.1.tgz(r-4.6-any)ProbeDeveloper_1.1.1.tgz(r-4.5-any)
ProbeDeveloper_1.1.1.tar.gz(r-4.7-any)ProbeDeveloper_1.1.1.tar.gz(r-4.6-any)
ProbeDeveloper_1.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ProbeDeveloper/json (API)

# Install 'ProbeDeveloper' in R:
install.packages('ProbeDeveloper', repos = c('https://junhuili1017.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/junhuili1017/probedeveloper/issues

Datasets:
  • samplefa - Sample data for target sequence region with class 'DNAStringSet'

On CRAN:

Conda:

2.70 score 164 downloads 1 exports 45 dependencies

Last updated from:bb57398368. Checks:7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develWARNING216
source / vignettesOK245
linux-releaseWARNING240
macos-releaseWARNING210
macos-oldrelWARNING170
windows-develWARNING187
windows-releaseWARNING185
windows-oldrelWARNING228
wasm-releaseOK133

Exports:ProbeMake

Dependencies:askpassBHBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomecigarillocodetoolscpp11crayoncurlformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicRangeshttrIRangesjsonlitelambda.rmatrixStatsmimeopensslR6RcppRCurlrestfulrRhtslibrjsonRsamtoolsrtracklayerS4VectorsSeqinfosnowsysTmCalculatorUCSC.utilsXMLXVectoryaml