Package: ProbeDeveloper 1.1.0

ProbeDeveloper: Develop Hybridization Probes

Hybridization probes for target sequences can be made based on melting temperature value calculated by R package 'TmCalculator' <https://CRAN.R-project.org/package=TmCalculator> and methods extended from Beliveau, B. J.,(2018) <doi:10.1073/pnas.1714530115>, and those hybridization probes can be used to capture specific target regions in fluorescence in situ hybridization and next generation sequence experiments.

Authors:Junhui Li

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ProbeDeveloper.pdf |ProbeDeveloper.html✨
ProbeDeveloper/json (API)

# Install 'ProbeDeveloper' in R:
install.packages('ProbeDeveloper', repos = c('https://junhuili1017.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • samplefa - Sample data for target sequence region with class 'DNAStringSet'

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 1 stars 141 downloads 1 exports 20 dependencies

Last updated 3 years agofrom:29db5043f8. Checks:OK: 6 WARNING: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winOKOct 31 2024
R-4.5-linuxWARNINGOct 31 2024
R-4.4-winOKOct 31 2024
R-4.4-macOKOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macOKOct 31 2024

Exports:ProbeMake

Dependencies:askpassBiocGenericsBiostringscrayoncurlgenericsGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemimeopensslR6S4VectorssysTmCalculatorUCSC.utilsXVectorzlibbioc