Package: ProbeDeveloper 1.1.0

ProbeDeveloper: Develop Hybridization Probes

Hybridization probes for target sequences can be made based on melting temperature value calculated by R package 'TmCalculator' <https://CRAN.R-project.org/package=TmCalculator> and methods extended from Beliveau, B. J.,(2018) <doi:10.1073/pnas.1714530115>, and those hybridization probes can be used to capture specific target regions in fluorescence in situ hybridization and next generation sequence experiments.

Authors:Junhui Li

ProbeDeveloper_1.1.0.tar.gz
ProbeDeveloper_1.1.0.zip(r-4.5)ProbeDeveloper_1.1.0.zip(r-4.4)ProbeDeveloper_1.1.0.zip(r-4.3)
ProbeDeveloper_1.1.0.tgz(r-4.4-any)ProbeDeveloper_1.1.0.tgz(r-4.3-any)
ProbeDeveloper_1.1.0.tar.gz(r-4.5-noble)ProbeDeveloper_1.1.0.tar.gz(r-4.4-noble)
ProbeDeveloper_1.1.0.tgz(r-4.4-emscripten)ProbeDeveloper_1.1.0.tgz(r-4.3-emscripten)
ProbeDeveloper.pdf |ProbeDeveloper.html
ProbeDeveloper/json (API)

# Install 'ProbeDeveloper' in R:
install.packages('ProbeDeveloper', repos = c('https://junhuili1017.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • samplefa - Sample data for target sequence region with class 'DNAStringSet'

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 1 stars 157 downloads 1 exports 20 dependencies

Last updated 3 years agofrom:29db5043f8. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 19 2024
R-4.5-winOKNov 19 2024
R-4.5-linuxOKNov 19 2024
R-4.4-winOKNov 19 2024
R-4.4-macOKNov 19 2024
R-4.3-winOKNov 19 2024
R-4.3-macOKNov 19 2024

Exports:ProbeMake

Dependencies:askpassBiocGenericsBiostringscrayoncurlgenericsGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemimeopensslR6S4VectorssysTmCalculatorUCSC.utilsXVectorzlibbioc