Package: ProbeDeveloper 1.1.1

ProbeDeveloper: Develop Hybridization Probes

Hybridization probes for target sequences can be made based on melting temperature value calculated by R package 'TmCalculator' <https://CRAN.R-project.org/package=TmCalculator> and methods extended from Beliveau, B. J.,(2018) <doi:10.1073/pnas.1714530115>, and those hybridization probes can be used to capture specific target regions in fluorescence in situ hybridization and next generation sequence experiments.

Authors:Junhui Li [cre, aut]

ProbeDeveloper_1.1.1.tar.gz
ProbeDeveloper_1.1.1.zip(r-4.7)ProbeDeveloper_1.1.1.zip(r-4.6)ProbeDeveloper_1.1.1.zip(r-4.5)
ProbeDeveloper_1.1.1.tgz(r-4.6-any)ProbeDeveloper_1.1.1.tgz(r-4.5-any)
ProbeDeveloper_1.1.1.tar.gz(r-4.7-any)ProbeDeveloper_1.1.1.tar.gz(r-4.6-any)
ProbeDeveloper_1.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ProbeDeveloper/json (API)

# Install 'ProbeDeveloper' in R:
install.packages('ProbeDeveloper', repos = c('https://junhuili1017.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/junhuili1017/probedeveloper/issues

Datasets:
  • samplefa - Sample data for target sequence region with class 'DNAStringSet'

On CRAN:

Conda:

2.70 score 170 downloads 1 exports 171 dependencies

Last updated from:bb57398368. Checks:7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING494
source / vignettesOK299
linux-release-x86_64WARNING483
macos-release-arm64WARNING260
macos-oldrel-arm64WARNING291
windows-develWARNING391
windows-releaseWARNING390
windows-oldrelWARNING369
wasm-releaseOK193

Exports:ProbeMake

Dependencies:abindade4AnnotationDbiAnnotationFilteraskpassbackportsbamsignalsbase64encbezierBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecigarillocirclizecliclustercodetoolscolorspacecpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArraydeldirdichromatdigestdplyrensembldbevaluatefarverfastmapfilelockfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggbioggplot2GlobalOptionsgluegraphgridExtragtableGvizhighrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2interpIRangesisobandjpegjquerylibjsonlitekaryoploteRKEGGRESTknitrlabelinglambda.rlaterlatticelatticeExtralazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimenlmennetopensslOrganismDbiotelpillarpixmappkgconfigplotlyplyrpngprettyunitsprogresspromisesProtGenericspurrrR6rappdirsRBGLRColorBrewerRcppRcppArmadilloRcppEigenRCurlregioneRreshape2restfulrRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorsS7sassscalessegmentedSeqinfoseqinrshapesnowspSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexTmCalculatorUCSC.utilsutf8VariantAnnotationvctrsviridisviridisLitewithrxfunXMLxml2XVectoryaml