{ "_id": "6a32558f3efcd9bda4380509", "Package": "gtWAS", "Type": "Package", "Title": "Genome and Transcriptome Wide Association Study", "Version": "1.1.1", "Date": "2026-03-18", "Authors@R": "c(\nperson(given = \"Junhui\",\nfamily = \"Li\",\nrole = c(\"aut\", \"cre\"),\nemail = \"ljh.biostat@gmail.com\"))", "Description": "Quantitative trait loci mapping and genome wide\nassociation analysis are used to find candidate molecular\nmarker or region associated with phenotype based on linkage\nanalysis and linkage disequilibrium. Gene expression\nquantitative trait loci mapping is used to find candidate\nmolecular marker or region associated with gene expression. In\nthis package, we applied the method in Liu W. (2011)\n and Gusev A. (2016)\n to genome and transcriptome wide\nassociation study, which is aimed at revealing the association\nrelationship between phenotype and molecular markers,\nexpression levels, molecular markers nested within different\nrelated expression effect and expression effect nested within\ndifferent related molecular marker effect. F test based on full\nand reduced model are performed to obtain p value or likelihood\nratio statistic. The best linear model can be obtained by\nstepwise regression analysis.", "License": "GPL (>= 2)", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-17 08:04:21 UTC", "User": "root" }, "Author": "Junhui Li [aut, cre]", "Maintainer": "Junhui Li ", "Repository": "https://junhuili1017.r-universe.dev", "Date/Publication": "2026-03-19 09:05:35 UTC", "RemoteUrl": "https://github.com/cran/gtWAS", "RemoteRef": "HEAD", "RemoteSha": "3f7d050832cbcf2890919c62d6b5a22176d9f599", "MD5sum": "3659df83454b9b659f513a3123e0cd29", "_user": "junhuili1017", "_type": "src", "_file": "gtWAS_1.1.1.tar.gz", "_fileid": "f7ffac995ccf8af1157da7dd207a615767cbb395396008f2513ef2d78cef0b7b", "_filesize": 195639, "_sha256": "f7ffac995ccf8af1157da7dd207a615767cbb395396008f2513ef2d78cef0b7b", "_created": "2026-06-17T08:04:21.000Z", "_published": "2026-06-18T11:12:53.694Z", "_distro": "noble", "_jobs": [ { "job": 81847346796, "time": 87, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7689453826" }, { "job": 81847346761, "time": 96, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7689459682" }, { "job": 81847346784, "time": 68, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7689447048" }, { "job": 81847346771, "time": 81, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7689452015" }, { "job": 81846935275, "time": 142, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7689421186" }, { "job": 81847346781, "time": 80, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7689452008" }, { "job": 81847346759, "time": 62, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7689444894" }, { "job": 81847346778, "time": 67, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7689446899" }, { "job": 81847346757, "time": 57, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7689445155" } ], "_buildurl": "https://github.com/r-universe/junhuili1017/actions/runs/27674639033", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/gtWAS", "_commit": { "id": "3f7d050832cbcf2890919c62d6b5a22176d9f599", "author": "Junhui Li ", "committer": "cran-robot ", "message": "version 1.1.1\n", "time": 1773911135 }, "_maintainer": { "name": "Junhui Li", "email": "ljh.biostat@gmail.com", "login": "junhuili1017", "description": "", "uuid": 31299960 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-12", "n": 1 } ], "_tags": [ { "name": "1.1.1", "date": "2026-03-19" } ], "_stars": 1, "_contributors": [ { "user": "junhuili1017", "count": 1, "uuid": 31299960 } ], "_userbio": { "uuid": 31299960, "type": "user", "name": "JunhuiLi", "followers": 18 }, "_downloads": { "count": 472, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/gtWAS" }, "_searchresults": 7, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/gtWAS.html", "manual.pdf" ], "_realowner": "junhuili1017", "_cranurl": false, "_releases": [ { "version": "1.0.0", "date": "2018-01-08" }, { "version": "1.1.0", "date": "2019-06-01" }, { "version": "1.1.1", "date": "2026-03-19" } ], "_exports": [ "Association", "ModelFit", "StepOne", "stp" ], "_datasets": [ { "name": "alldata", "title": "Data including base and expression data", "object": "alldata", "file": "alldata.rda", "class": [ "data.frame" ], "fields": [ "base1", "base2", "base3", "base4", "base5", "base6", "base7", "base8", "base9", "base10", "base11", "base12", "base13", "base14", "base15", "base16", "base17", "base18", "base19", "base20", "base21", "base22", "base23", "base24", "base25", "base26", "base27", "base28", "base29", "base30", "base31", "base32", "base33", "base34", "base35", "base36", "base37", "base38", "base39", "base40", "base41", "base42", "base43", "base44", "base45", "base46", "base47", "base48", "base49", "base50", "base51", "base52", "base53", "base54", "base55", "base56", "base57", "base58", "base59", "base60", "base61", "base62", "base63", "base64", "base65", "base66", "base67", "base68", "base69", "base70", "base71", "base72", "base73", "base74", "base75", "base76", "base77", "base78", "base79", "base80", "base81", "base82", "base83", "base84", "base85", "base86", "base87", "base88", "base89", "base90", "base91", "base92", "base93", "base94", "base95", "base96", "base97", "base98", "base99", "base100", "exp1", "exp2", "exp3", "exp4", "exp5", "exp6", "exp7", "exp8", "exp9", "exp10", "exp11", "exp12", "exp13", "exp14", "exp15", "exp16", "exp17", "exp18", "exp19", "exp20", "exp21", "exp22", "exp23", "exp24", "exp25", "exp26", "exp27", "exp28", "exp29", "exp30", "exp31", "exp32", "exp33", "exp34", "exp35", "exp36", "exp37", "exp38", "exp39", "exp40", "exp41", "exp42", "exp43", "exp44", "exp45", "exp46", "exp47", "exp48", "exp49", "exp50", "exp51", "exp52", "exp53", "exp54", "exp55", "exp56", "exp57", "exp58", "exp59", "exp60", "exp61", "exp62", "exp63", "exp64", "exp65", "exp66", "exp67", "exp68", "exp69", "exp70", "exp71", "exp72", "exp73", "exp74", "exp75", "exp76", "exp77", "exp78", "exp79", "exp80", "exp81", "exp82", "exp83", "exp84", "exp85", "exp86", "exp87", "exp88", "exp89", "exp90", "exp91", "exp92", "exp93", "exp94", "exp95", "exp96", "exp97", "exp98", "exp99", "exp100" ], "rows": 100, "table": true, "tojson": true }, { "name": "Tdata", "title": "Phenotype data", "object": "Tdata", "file": "Tdata.rda", "class": [ "data.frame" ], "fields": [ "Trait1" ], "rows": 100, "table": true, "tojson": true } ], "_help": [ { "page": "gtWAS-package", "title": "Genome and Transcriptome Wide Association Study", "topics": [ "gtWAS-package" ] }, { "page": "alldata", "title": "Data including base and expression data", "topics": [ "alldata" ] }, { "page": "Association", "title": "Genome and Transcriptome Wide Association", "topics": [ "Association" ] }, { "page": "ModelFit", "title": "Compute model fit statistics", "topics": [ "ModelFit" ] }, { "page": "StepOne", "title": "Compute minimum p value and information criteria statistics in one step", "topics": [ "StepOne" ] }, { "page": "stp", "title": "stepwise regression", "topics": [ "stp" ] }, { "page": "Tdata", "title": "Phenotype data", "topics": [ "Tdata" ] } ], "_rundeps": [], "_score": 1, "_indexed": true, "_nocasepkg": "gtwas", "_universes": [ "junhuili1017" ], "_progress_url": "https://github.com/r-universe/junhuili1017/actions/runs/27755511164", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.1", "date": "2026-06-18T11:16:44.000Z", "distro": "noble", "commit": "3f7d050832cbcf2890919c62d6b5a22176d9f599", "fileid": "0ceaba7e60504c16f75f1df20169a570e15d4486933ae6802357fba753a38b7c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/junhuili1017/actions/runs/27755511164" }, { "r": "4.6.0", "os": "linux", "version": "1.1.1", "date": "2026-06-18T11:16:41.000Z", "distro": "noble", "commit": "3f7d050832cbcf2890919c62d6b5a22176d9f599", "fileid": "d7bfd0b7cfc634838859b55a0f84b7af0de6c8137488522aef8bf3eb50e67ac3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/junhuili1017/actions/runs/27755511164" }, { "r": "4.5.3", "os": "mac", "version": "1.1.1", "date": "2026-06-18T11:16:31.000Z", "commit": "3f7d050832cbcf2890919c62d6b5a22176d9f599", "fileid": "f7a91dcbe9d1db7c241b5a85446b7e41ef18944f4c65836dd006c68a53cf6b3b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/junhuili1017/actions/runs/27755511164" }, { "r": "4.6.0", "os": "mac", "version": "1.1.1", "date": "2026-06-18T11:15:57.000Z", "commit": "3f7d050832cbcf2890919c62d6b5a22176d9f599", "fileid": "c42fc18996266468b737ca98c2da81daedcc7abfec31b53d6f9d7e104c30139c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/junhuili1017/actions/runs/27755511164" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.1", "date": "2026-06-18T11:16:31.000Z", "commit": "3f7d050832cbcf2890919c62d6b5a22176d9f599", "fileid": "184c421707889a33eca97fa3b18de0ef07b84cbbc240613391f6fb50a3687071", "status": "success", "buildurl": "https://github.com/r-universe/junhuili1017/actions/runs/27755511164" }, { "r": "4.7.0", "os": "win", "version": "1.1.1", "date": "2026-06-18T11:15:48.000Z", "commit": "3f7d050832cbcf2890919c62d6b5a22176d9f599", "fileid": "92d78c5771e625cffbd4be37d07d3a442a076f574995a9d789dc0ecc3001235a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/junhuili1017/actions/runs/27755511164" }, { "r": "4.5.3", "os": "win", "version": "1.1.1", "date": "2026-06-18T11:15:52.000Z", "commit": "3f7d050832cbcf2890919c62d6b5a22176d9f599", "fileid": "99a5d66bfe056c9830fa089ee931fa810acad98f1492befa9dc1dc5f06c987db", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/junhuili1017/actions/runs/27755511164" }, { "r": "4.6.0", "os": "win", "version": "1.1.1", "date": "2026-06-18T11:15:44.000Z", "commit": "3f7d050832cbcf2890919c62d6b5a22176d9f599", "fileid": "2e0d37acb27a5abcc883a5687e26cbbdb29cfd327b806217c0602032a480d324", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/junhuili1017/actions/runs/27755511164" } ] }