Package: JM4QTN
Type: Package
Title: Joint Mapping for Quantitative Trait Loci
Version: 1.0.0
Date: 2026-05-09
Authors@R: c(person(given = "Junhui", family = "Li",
           role = c("aut", "cre"),
           email = "ljh.biostat@gmail.com"),
           person(given = "Wenxin", family = "Liu",
           role = "aut"))
Description: A comprehensive computational framework for joint mapping,
        developed by Junhui Li (2016;
        doi:10.11841/j.issn.1007-4333.2016.06.002), supports
        quantitative trait locus detection in structured genetic
        populations. It integrates robust phenotype summarization,
        computes genotype probabilities, and imputes missing markers
        for association and linkage mapping. Empirical significance
        thresholds are estimated via permutation testing coupled with
        stepwise regression. The framework enables genome-wide scans
        under both univariate and multivariate trait models,
        streamlining the discovery of complex genetic architectures.
Imports: lsmeans (>= 2.25.5), StepReg (>= 1.5.0)
Depends: R (>= 3.5.0)
Encoding: UTF-8
Language: en-US
RoxygenNote: 7.3.2
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev
Repository: https://junhuili1017.r-universe.dev
Date/Publication: 2026-05-13 21:33:45 UTC
RemoteUrl: https://github.com/junhuili1017/jm4qtn
RemoteRef: HEAD
RemoteSha: 7ab88ec961e6568bde4317ed03c6f4cff9aca23d
NeedsCompilation: no
Packaged: 2026-09-25 02:00:14 UTC; root
Author: Junhui Li [aut, cre],
  Wenxin Liu [aut]
Maintainer: Junhui Li <ljh.biostat@gmail.com>